AI导哈

数据与研究

scikit-bio

k-dense-ai/scie…t-skills

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

  • 1980 次安装
  • 5.5万 星标
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安装命令

npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill scikit-bio

SKILL.md

scikit-bio

Overview

Targets scikit-bio 0.7.4. Use it for sequence manipulation, alignment, phylogenetics, microbial ecology, and multivariate statistics. Native tests exercise small synthetic fixtures; examples with filenames or undefined inputs are workflow templates. See review evidence and boundaries.

When to Use This Skill

This skill should be used when the user:

  • Works with biological sequences (DNA, RNA, protein)
  • Needs to read/write biological file formats (FASTA, FASTQ, GenBank, Newick, BIOM, etc.)
  • Performs sequence alignments or searches for motifs
  • Constructs or analyzes phylogenetic trees
  • Calculates diversity metrics (alpha/beta diversity, UniFrac distances)
  • Performs ordination analysis (PCoA, CCA, RDA)
  • Runs statistical tests on biological/ecological data (PERMANOVA, ANOSIM, Mantel)
  • Analyzes microbiome or community ecology data
  • Works with protein embeddings from language models
  • Needs to manipulate biological data tables

相关 Skills

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