AI导哈

数据与研究

biopython

k-dense-ai/scie…t-skills

Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Supports batch processing, custom molecular-biology pipelines, BLAST automation, structure analysis, and motif analysis.

  • 1998 次安装
  • 5.5万 星标
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安装命令

npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill biopython

SKILL.md

Biopython: Computational Molecular Biology in Python

Overview

Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks. These examples target Biopython 1.88 (released 6 August 2026), tested here on Python 3.13. It requires Python 3.10+ and NumPy; Python 3.10 support is deprecated. Upgrade to 1.88 for its Bio.Nexus parser security fix, in addition to the Entrez XML fix in 1.87. See the release notes. Local example checks and external-service limits are recorded in references/review.md; examples requiring user files or external programs are illustrative unless listed there as exercised.

When to Use This Skill

Use this skill when:

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