后端与数据库

ensembl-database

Name: ensembl-database
Author: google-deepmind

google-deepmind/science-skills

Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP). Use this skill as a primary ID translator, genomic sequence database and variant effect prediction tool.

2195 次安装
3400 星标
收录于 2026.05.19

安装命令

$ npx skills add https://github.com/google-deepmind/science-skills --skill ensembl-database

SKILL.md

Ensembl Database: ID Mapping and Genomic Features

Prerequisites

uv: Read the uv skill and follow its Setup instructions to ensure uv is installed and on PATH.
User Notification: If .licenses/ensembl_database_LICENSE.txt does not already exist in the workspace root directory then (1) prominently notify the user to check the terms at https://useast.ensembl.org/index.html and https://github.com/Ensembl/ensembl-rest/wiki, then (2) create the file recording the notification text and timestamp.

Overview

The Ensembl database is a resource for genome annotation. This skill allows you to interact with the Ensembl REST API to resolve ambiguous symbols, cross-reference IDs (RefSeq, HGNC, UniProt, ENSG), fetch raw sequences, and retrieve detailed transcript structures.

SKILL.md

Ensembl Database: ID Mapping and Genomic Features

Prerequisites

Overview

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